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Download Data From Ftp Server Of ENA Database Using Accession Numbers

- 1 answer

I would like to download complete protein sequences of some organisms given in ENA database (under genomes at ENA section) with the information I have i.e. around 2500 accession numbers.

I tried to dig deeper to find them in ftp server using taxonomy division and all. but could not find anything relevant. Downloading them one by one would not be an ideal solution.

Hence could you guys help me if you know any packages in R or python do this for me?

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Answer

I found the solution to my subjective problem:

curl -F [email protected]<input_file_path> http://www.ebi.ac.uk/ena/data/download?
display=<output_format> 
-o<output_file_name>
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source: stackoverflow.com
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